Selected Publications
1990-2003
| 2003 |
| 1. Jiang, S., W. Fu, W, Chu, and J.A. Fuhrman.
2003. The vertical distribution and diversity of marine
bacteriophage at a station off Southern California. Microb. Ecol. 45:399-410. Online DOI: 10.1007/s00248-002-1059-3 [Abstract] |
| 2. Boehm, A.B, J.A.Fuhrman, R.D.Mrše, and S. B.Grant. 2003 A tiered approach for identfication of a human fecal pollution source at a recreational beach:case study at Avalon Bay, Catalina Island, California, USA. Env. Sci. & Tech. 37(4):673-680 DOI: 10.1021/es025934x2. |
| 3. Fuhrman, J.A. and M.S. Schwalbach. 2003. Viral influence on aquatic bacterial communities. Biol. Bulletin. 204(2):192-195 |
| 4. Gonzalez, J.M., J.S. Covert, W.B. Whitman, J. Henriksen, F. Mayer, B. Scharf, R. Schmitt, A. Buchan, J.A. Fuhrman, R.P. Kiene, and M.A. Moran. 2003. Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., DMSP demethylating bacteria from marine environments. Int. J. Syst. Evol. Microbiol. In press |
| 5. Hewson I, and J. A. Fuhrman. Viriobenthos production and virioplankton sorptive scavenging by suspended sediment particles in coastal and pelagic waters. Microbial Ecology. In Press |
| 6. Hewson, I., G. A. Vargo, and J.A. Fuhrman. Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: effects of virus infection, containment, and nutrient enrichment. Microbial Ecology. In Press |
| 7. Schwalbach, M.S., Hewson, I., Fuhrman, J.A. Viral effects on marine bacterioplankton community composition. Submitted to Aquatic Microbial Ecology. |
| 2002 |
| 1. Fuhrman, J. A., J. F. Griffith, and M. S. Schwalbach. 2002. Prokaryotic and viral diversity patterns in marine plankton. Ecological Research 17 (2): 183-194 |
| 2. Staley, J.T. and J.A. Fuhrman. 2002. Microbial Diversity. In: Encyclopedia of global environmental change, vol. 2, The Earth system: biological and ecological dimensions of global environmental change, H.A. Mooney and J.G. Canadell, editors. Wiley & Sons, Chichester UK. pp 421-425 |
| 3. Fuhrman, J.A.2002. Community structure and function in prokaryotic marine plankton. Antonie van Leeuwenhoek 81:521-527 [Abstract] |
| 4. Fuhrman, J.A. 2002. Viruses in the Marine Environment. In: Encyclopedia of Environmental Microbiology, G. Bitton, ed., Wiley & Sons, New York pages 3300-3310 |
| 2001 |
| 1. Fuhrman, J.A., and D.G. Capone. 2001. Nifty nanoplankton. Nature (London) 412: 593-594 [Abstract] |
| 2. Hewson, I., J. M. O’Neil, J. A. Fuhrman, W.C. Dennison. 2001. Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries. Limnol Oceanogr. 46:1734-1746 |
| 3. Noble, R.T. and J.A. Fuhrman. 2001. Enteroviruses detected by reverse transcriptase polymerase chain reaction from the coastal waters of Santa Monica Bay, California: Low correlation to bacterial indicator levels. |
| 4. Fuhrman, J.A. 2001. Community structure: Bacteria and Archaea. In: C.J. Hurst, R.L. Crawford, G.R. Knudsen, M.J. McInerney, L.D. Stetzenbach, eds., Manual of Environmental Microbiology, 2nd edition. ASM Press, Washington DC, pages 371-377 |
| 2000 |
| 1. Fuhrman, J.A. 2000. Impact of viruses on planktonic bacteria. In: Microbial Ecology of the Oceans, D.L. Kirchman (ed.), Wiley & Sons. pp 327 - 350 |
| 2. Noble, R.T and, J. A. Fuhrman. 2000. Rapid viral production and removal as measured with fluorescently labeled viruses as tracers.Appl. Environ. Microbiol.. 66:3790-3797 |
| 3. Ouverney, C.C. and J.A. Fuhrman. 2000. Marine planktonic Archaea take up amino acids. Appl. Environ. Microbiol. 66:4829-4833[Abstract] |
| 4. Fuhrman, J.A. 2000. Microbial Contamination. In: Opportunities for Environmental Applications of Marine Biotechnology. National Academy Press, Washington DC, pp. 102-111 |
| 1999 |
| 1. Ouverney, C.C. and J.A. Fuhrman. 1999. Combined microautoradiography -16S rRNA probe technique for the determination of radioisotope uptake by specific microbial cell types in situ.Appl. Environ. Microbiol. 65:1746-1752 [Abstract] |
| 2. Noble, R.T., M. Middelboe, and J.A. Fuhrman. 1999. The effects of viral enrichment on the mortality and growth of heterotrophic bacterioplankton. Aquat. Microb. Ecol. 18:1-13 |
| 3. Fuhrman, J.A. 1999. Marine viruses and their biogeochemical and ecological effects.Nature (London) 399: 541-548 [Abstract] |
| 4. Noble, R.T. and J.A. Fuhrman. 1999. Breakdown and microbial uptake of marine viruses and other lysis products. Aquat. Microb. Ecol. 20:1-11 |
| 5. 40. Gasol, J.M.,U. L. Zweifel, F. Peters, J.A. Fuhrman, and A Hangstrom. 1999. Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria.Appl. Environ. Microbiol. 65:4475-4483 [Abstract] |
| 1998 |
| 1. Noble, R.T., and J.A. Fuhrman. 1998. Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat. Microb. Ecol. 14: 113-118 |
| 2. Fuhrman, J.A. and L. Campbell. 1998. Microbial microdiversity. Nature (London) 393: 410-411 |
| 3. Fuhrman, J.A. and C. C. Ouverney. 1998. Marine microbial diversity studied via 16S rRNA sequences: cloning results from coastal waters and counting of native archaea with fluorescent single cell probes. Aquat. Ecol. 32: 3-15 |
| 1997 |
| 1. Noble, R.T., and J.A. Fuhrman. 1997. Virus decay and its causes in coastal waters. |
| 2. Karner, M. and J.A. Fuhrman. 1997. Determination of “active” marine bacterioplankton: a comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining. |
| 3. Fuhrman, J.A., and A.A. Davis.1997. Widespread Archaea and novel Bacteria from the deep sea as shown by 16S rRNA gene sequences. |
| 4. Ouverney, C.C. and J.A. Fuhrman. 1997. Increasing fluorescence of 16S rRNA in situ hybridization with chloramphenicol. |
| 1995 |
| 1. Fuhrman, J.A. and R.T. Noble. 1995. Viruses and protists cause similar bacterial mortality in coastal seawater. Limnol. Oceanogr. 40: 1236-1242 |
| 1994 |
| 1. Wilcox, R.M. and J.A. Fuhrman. 1994. Bacterial viruses in coastal seawater: lytic rather than lysogenic production. Mar. Ecol. Prog. Ser. 114: 35-45 |
| 2. Fuhrman, J.A., S.H. Lee, Y. Masuchi, A.A. Davis, and R.M. Wilcox. 1994. Characterization of marine prokaryotic communities via DNA and RNA. Microb. Ecol. 28:133-145 |
| 1993 |
| 1. Fuhrman, J.A. 1993. Measuring marine bacterial growth (Current Contents Citation Classic). Current Contents: Agriculture, Biology, and Environmental Sciences 24: 8 (not reviewed). |
| 2. Fuhrman, J.A. and C. A. Suttle. 1993. Viruses in marine plankton. Oceanography 6: 51-63 |
| 3. Proctor, L.M., A. Okubo, and J.A. Fuhrman. 1993. Calibrating estimates of phage-induced mortality in marine bacteria: Ultrastructural studies of marine bacteriophage development from one-step growth experiments. Microb. Ecol. 25: 161-182 |
| 4. Fuhrman, J.A., K. McCallum, and A.A. Davis. 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 59: 1294-1302 |
| 1992 |
| 1. Fuhrman, J.A. 1992. Bacterioplankton roles in cycling of organic matter: the microbial food web. In P.G. Falkowski and A.D. Woodhead (editors), Primary Productivity and Biogeochemical Cycles in the Sea. Plenum Press, New York. pp. 361-383 |
| 2. Fuhrman, J.A., K. McCallum, and A.A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature (London) 356: 148-149 |
| 1991 |
| 1. Fuhrman, J.A. and D.G. Capone. 1991. Possible biogeochemical consequences of ocean fertilization. Limnol. Oceanogr. 36: 1951-1959 |
| 2. Lee, S.H. and J.A. Fuhrman. 1991. Spatial and temporal variation of natural bacterioplankton assemblages studied by total genomic DNA cross-hybridization. Limnol. Oceanogr. 36: 1277-1287 |
| 1990 |
| 1. Fuhrman, J.A. 1990. Dissolved free amino acid cycling in an estuarine outflow plume. Mar. Ecol. Prog. Ser. 66: 197-203 |
| 2. Suttle, C.A., J.A. Fuhrman, and D.G. Capone. 1990. Rapid ammonium cycling and concentration-dependent partitioning of ammonium and phosphate: implications for carbon transfer in planktonic communities. Limnol. Oceanogr. 35: 424-433 |
| 3. Lee, S. and J.A. Fuhrman. 1990. DNA hybridization to compare species compositions of natural bacterioplankton assemblages. Appl. Environ. Microbiol. 56: 739-746 |
| 4. Proctor, L.M. and J.A. Fuhrman. 1990. Viral mortality of marine cyanobacteria and bacteria. Nature 343: 60-62 |